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Dec 22, 2025
Clark T; Parker J; Al Manir S; Axelsson U; Ballllosero Navarro F; Chinn B; Churas CP; Dailamy A; Doctor Y; Fall J; Forget A; Gao J; Hansen JN; Hu M; Johannesson A; Khaliq H; Lee YH; Lenkiewicz J; Levinson MA; Marquez C; Metallo C; Muralidharan M; Nourreddine S; Niestroy J; Obernier K; Pan E; Polacco B; Pratt D; Qian G; Schaffer L; Sigaeva A; Thaker S; Zhang Y; Bélisle-Pipon JC; Brandt C; Chen JY; Ding Y; Fodeh S; Krogan N; Lundberg E; Mali P; Payne-Foster P; Ratcliffe S; Ravitsky V; Sali A; Schulz W; Ideker T, 2025, "Cell Maps for Artificial Intelligence - June 2025 Data Release (Beta)", https://doi.org/10.18130/V3/F3TD5R, University of Virginia Dataverse, V3
Description This dataset is a revision of the June 2025 Data Release of Cell Maps for Artificial Intelligence (CM4AI; CM4AI.org), the Functional Genomics Grand Challenge in the NIH Bridge2AI program. This revision includes adding RGB immunofluorescent images, corrections to ro-crate metadata, and changes to naming conventions. This Beta release inc... |
JSON - 1.0 MB -
MD5: fca2ec871d4065ca45bbd80ba7d70bd0
This dataset represents raw sequence data from an expressed genome-scale CRISPRi Perturbation Cell Atlas in KOLF2.1J human induced pluripotent stem cells (hiPSCs) mapping transcriptional and fitness phenotypes associated with 11,739 targeted genes, as part of the Cell Maps for Artificial Intelligence (CM4AI; CM4AI.org) Functional Genomics Grand Cha... |
HTML - 322.2 KB -
MD5: 0da87e3d75893e5308b0999816b76bdd
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Dec 22, 2025
Clark, T; Parker, J; Al Manir, S; Axelsson, U; Ballllosero Navarro, F; Chinn, B; Churas, CP; Dailamy, A; Doctor, Y; Fall, J; Forget, A; Gao, J; Hansen, JN; Hu, M; Johannesson, A; Khaliq, H; Lee, YH; Lenkiewicz, J; Levinson, MA; Marquez, C; Metallo, C; Muralidharan, M; Nourreddine, S; Niestroy, J; Obernier, K; Pan, E; Polacco, B; Pratt, D; Qian, G; Schaffer, L; Sigaeva, A; Thaker, S; Zhang, Y; Bélisle-Pipon, JC; Brandt, C; Chen, JY; Ding, Y; Fodeh, S; Krogan, N; Lundberg, E; Mali, P; Payne-Foster, P; Ratcliffe, S; Ravitsky, V; Sali, A; Schulz, W; Ideker, T, 2025, "Cell Maps for Artificial Intelligence - October 2025 Data Release (Beta)", https://doi.org/10.18130/V3/K7TGEM, University of Virginia Dataverse, V2
Description This dataset is the October 2025 Data Release of Cell Maps for Artificial Intelligence (CM4AI; CM4AI.org), the Functional Genomics Grand Challenge in the NIH Bridge2AI program. CM4AI is generating multi-modal data including protein-protein interaction (PPI), spatial localization, and genetic perturbation data in MDA-MB-468 breast cancer... |
ZIP Archive - 79.6 KB -
MD5: 1cfc4e8e2ead7513a035cc7730046ebb
This dataset represents raw sequence data from an expressed genome-scale CRISPRi Perturbation Cell Atlas in KOLF2.1J human induced pluripotent stem cells (hiPSCs) mapping transcriptional and fitness phenotypes associated with 11,739 targeted genes. |
ZIP Archive - 203.5 KB -
MD5: c14cc7aaaa0e7231a0d3ec296ff58518
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ZIP Archive - 3.8 GB -
MD5: 0d972b80744344ddeede516a0cf6e3d7
This data set displays the spatial localization of 464 proteins of interest in cells of the breast cancer cell line MDA-MB-468 treated with paclitaxel as imaged by immunofluorescence-based staining (ICC-IF) and confocal microscopy in the Lundberg Lab at Stanford University, as part of the Cell Maps for Artificial Intelligence (CM4AI; CM4AI.org) pro... |
ZIP Archive - 4.6 GB -
MD5: a98affcc05429650c6bb3906cd836d55
This data set displays the spatial localization of 464 proteins of interest in cells of the breast cancer cell line MDA-MB-468 treated as imaged by immunofluorescence-based staining (ICC-IF) and confocal microscopy in the Lundberg Lab at Stanford University, as part of the Cell Maps for Artificial Intelligence (CM4AI; CM4AI.org) project. Nuclei wer... |
ZIP Archive - 4.2 GB -
MD5: ad4e68ccc14b0f3349dad3321e7b81b2
This data set displays the spatial localization of 464 proteins of interest in cells of the breast cancer cell line MDA-MB-468 treated with vorinostat as imaged by immunofluorescence-based staining (ICC-IF) and confocal microscopy in the Lundberg Lab at Stanford University, as part of the Cell Maps for Artificial Intelligence (CM4AI; CM4AI.org) pro... |
ZIP Archive - 23.8 MB -
MD5: fb04933a21e4395cce56930a014c6b4e
This dataset was generated by size exclusion chromatography-mass spectroscopy (SEC-MS) on undifferentiated KOLF2.1J human induced pluripotent stem cells (hiPSCs), in the Nevan Krogan laboratory at the University of California San Francisco. |
