Cell Maps for Artificial Intelligence (CM4AI) http://CM4AI.org will deliver machine-readable hierarchical maps of cell architecture as AI-ready data, together with quarterly data releases of map-input data streams. CM4AI cell maps are produced from multimodal interrogation of chromatin modifiers, metabolic enzymes, and other proteins involved in cancer, neuropsychiatric, and cardiac disorders in disease-relevant cell lines under treated and untreated conditions, utilizing state-of-the-art mass spectrometry-based proteomics, spatial proteomics / cell imaging, and genetic perturbations via CRISPR/Cas9. CM4AI is a collaboration of UCSD, UCSF, Stanford, UVA, Yale, UT Austin, UA Birmingham, Simon Fraser University, and the Hastings Center, as part of the NIH Bridge2AI program.
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JSON - 1.0 MB - MD5: fca2ec871d4065ca45bbd80ba7d70bd0
This dataset represents raw sequence data from an expressed genome-scale CRISPRi Perturbation Cell Atlas in KOLF2.1J human induced pluripotent stem cells (hiPSCs) mapping transcriptional and fitness phenotypes associated with 11,739 targeted genes, as part of the Cell Maps for Artificial Intelligence (CM4AI; CM4AI.org) Functional Genomics Grand Cha...
HTML - 322.2 KB - MD5: 0da87e3d75893e5308b0999816b76bdd
ZIP Archive - 79.6 KB - MD5: 1cfc4e8e2ead7513a035cc7730046ebb
This dataset represents raw sequence data from an expressed genome-scale CRISPRi Perturbation Cell Atlas in KOLF2.1J human induced pluripotent stem cells (hiPSCs) mapping transcriptional and fitness phenotypes associated with 11,739 targeted genes.
ZIP Archive - 203.5 KB - MD5: c14cc7aaaa0e7231a0d3ec296ff58518
ZIP Archive - 3.8 GB - MD5: 0d972b80744344ddeede516a0cf6e3d7
This data set displays the spatial localization of 464 proteins of interest in cells of the breast cancer cell line MDA-MB-468 treated with paclitaxel as imaged by immunofluorescence-based staining (ICC-IF) and confocal microscopy in the Lundberg Lab at Stanford University, as part of the Cell Maps for Artificial Intelligence (CM4AI; CM4AI.org) pro...
ZIP Archive - 4.6 GB - MD5: a98affcc05429650c6bb3906cd836d55
This data set displays the spatial localization of 464 proteins of interest in cells of the breast cancer cell line MDA-MB-468 treated as imaged by immunofluorescence-based staining (ICC-IF) and confocal microscopy in the Lundberg Lab at Stanford University, as part of the Cell Maps for Artificial Intelligence (CM4AI; CM4AI.org) project. Nuclei wer...
ZIP Archive - 4.2 GB - MD5: ad4e68ccc14b0f3349dad3321e7b81b2
This data set displays the spatial localization of 464 proteins of interest in cells of the breast cancer cell line MDA-MB-468 treated with vorinostat as imaged by immunofluorescence-based staining (ICC-IF) and confocal microscopy in the Lundberg Lab at Stanford University, as part of the Cell Maps for Artificial Intelligence (CM4AI; CM4AI.org) pro...
ZIP Archive - 23.8 MB - MD5: fb04933a21e4395cce56930a014c6b4e
This dataset was generated by size exclusion chromatography-mass spectroscopy (SEC-MS) on undifferentiated KOLF2.1J human induced pluripotent stem cells (hiPSCs), in the Nevan Krogan laboratory at the University of California San Francisco.
ZIP Archive - 23.0 MB - MD5: 662d62ced9d379f7024e5c6d55859fbb
This dataset was generated by size exclusion chromatography-mass spectroscopy (SEC-MS) following the treatment of vorinostat or paclitaxel on MDA-MB468 human breast cancer cells, in the Nevan Krogan laboratory at the University of California San Francisco.
ZIP Archive - 24.6 KB - MD5: 15dc59312466dbfac85f59b57d27eee6
This dataset represents an expressed genome-scale CRISPRi Perturbation Cell Atlas in KOLF2.1J human induced pluripotent stem cells (hiPSCs) mapping transcriptional and fitness phenotypes associated with 11,739 targeted genes.
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