Cell Maps for Artificial Intelligence (CM4AI) http://CM4AI.org will deliver machine-readable hierarchical maps of cell architecture as AI-ready data, together with quarterly data releases of map-input data streams. CM4AI cell maps are produced from multimodal interrogation of chromatin modifiers, metabolic enzymes, and other proteins involved in cancer, neuropsychiatric, and cardiac disorders in disease-relevant cell lines under treated and untreated conditions, utilizing state-of-the-art mass spectrometry-based proteomics, spatial proteomics / cell imaging, and genetic perturbations via CRISPR/Cas9. CM4AI is a collaboration of UCSD, UCSF, Stanford, UVA, Yale, UT Austin, UA Birmingham, Simon Fraser University, and the Hastings Center, as part of the NIH Bridge2AI program.
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JSON - 1000.1 KB - MD5: 1cafefa32a897998e3e2ba0a29a3ef5c
This dataset represents raw sequence data from an expressed genome-scale CRISPRi Perturbation Cell Atlas in KOLF2.1J human induced pluripotent stem cells (hiPSCs) mapping transcriptional and fitness phenotypes associated with 11,739 targeted genes, as part of the Cell Maps for Artificial Intelligence (CM4AI; CM4AI.org) Functional Genomics Grand Cha...
May 11, 2024
Clark, Timothy; Schaffer, Leah; Obernier, K; Al Manir, Sadnan; Churas, Christopher; Dailamy, A; Doctor, Y; Forget, A; Hansen, JN; Hu, M; Lenkiewicz, J; Levinson, MA; Marquez, C; Mohan, J; Nourreddine, S; Niestroy, J; Pratt, D; Qian, G; Thaker, S; Belisle-Pipon, J-C; Brandt, C; Chen, J; Ding, Y; Fodeh, S; Krogan, N; Lundberg, E; Mali, P; Payne-Foster, P; Ratcliffe, S; Ravitsky, V; Sali, A; Schulz, W; Ideker, T, 2024, "Cell Maps for Artificial Intelligence - Data Release", https://doi.org/10.18130/V3/DXWOS5, University of Virginia Dataverse, V1
This collection is the 0.5 alpha data release of the the Cell Maps for Artificial Intelligence (CM4AI) Functional Genomics Data Generation Project, a component of the U.S. National Institute of Health’s (NIH) Bridge2AI program. CM4AI’s objective is to deliver machine-readable hierarchical maps of cell architecture as AI-Ready data produced from mul...
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